Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPKKKVAGLIKLQIVAGQANPAPPVGPALGQHGVNIMEFCKAYNAATENQRGNVIPVEITVYEDRSFTFTLKTPPAAKLLLKAAGVAKGSAEPHKTKVAKVTWDQVREIAETKKTDLNANDVDAAAKIIAGTARSMGITVE
5DM7 Chain:F ((2-139))
----RRVAGIVKLQLPAGKATPAPPVGPALGQYGANIMEFTKAFNAQTADKGDAIIPVEITIYADRSFTFITKTPPMSYLIRKAAGIGKGSSTPNKAKVGKLNWDQVLEIAKTKMPDLNAGSVEAAANTVAGTARSMGVTVE
General information:
TITO was launched using:
RESULT:
Template:
5DM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63150 for 922 contacts (-68.5/contact) +
2D Compatibility (PS) -15442 + (NN) -8929 + (LL) 276
1D Compatibility (HY) -10800 + (ID) 4450
Total energy: -102495.0 ( -111.17 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_5DM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DM7-query.scw
PDB file :
Tito_Scwrl_5DM7.pdb
: