Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAWEYD-WPASRWRQHLNAQLEGT-YSLPLIGSWHGTDGGYLELYWAAKDLISHYYDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTT----N--RRMALYALEAPTTAA
3FBU Chain:A ((4-167))
--------------------------------------KAERLLIRKFEFKDWEAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKNMG--AKNFPVILIGENILVGHIVFHKYFG----------EHTYEIGWVF-NPKYFNKGYASEAAQATLKYGF-KEMKLHRIIATCQPENTPSYRVMEKIGMRREGYFKKCIPHGNEWWDEYYYAILEE----
General information:
TITO was launched using:
RESULT:
Template:
3FBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85521 for 1133 contacts (-75.5/contact) +
2D Compatibility (PS) -15967 + (NN) -3133 + (LL) 3276
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -105745.0 ( -93.33 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3FBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FBU-query.scw
PDB file :
Tito_Scwrl_3FBU.pdb
: