Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI---HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
3TR0 Chain:A ((7-184))
--------------------ANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLRQ-----LKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHII--------
General information:
TITO was launched using:
RESULT:
Template:
3TR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89151 for 1320 contacts (-67.5/contact) +
2D Compatibility (PS) -19923 + (NN) -11195 + (LL) 652
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -140717.0 ( -106.60 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3TR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR0-query.scw
PDB file :
Tito_Scwrl_3TR0.pdb
: