Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPTEYPATAEESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEHRRTEIARIVEQMAPAERHGLVRALTAFTEAGGEPDARYEIE
2RDP Chain:A ((40-132))
------------------------------------------ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEH---VVRIRLLEKGERIIEEVIEKRQRDLANVLESFSDEE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57822 for 574 contacts (-100.7/contact) +
2D Compatibility (PS) -9179 + (NN) -1085 + (LL) 5640
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -71646.0 ( -124.82 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2RDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDP-query.scw
PDB file :
Tito_Scwrl_2RDP.pdb
: