Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPD-----LFMHRENAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD |
| 3PVS Chain:A ((51-176)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIRE-AIERARQNRNAGRRTILFVDEVHRF------AFLPHIED----------------GTITFIGATTENPSFE-LNSALLSRARVYLLK---------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -28665 for 701 contacts (-40.9/contact) +
2D Compatibility (PS) -11461 + (NN) -6788 + (LL) 23472
1D Compatibility (HY) 400 + (ID) 750
Total energy: -23792.0 ( -33.94 by residue)
QMean score : 0.192
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