Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKDKLHWLAMHGVIRGIAAIGIRRGDLQARLIADPAVATDPVPFYDEVRSHGALVRNRANYLTVDHRLAHDLLRSDDFRVVSFGENLPPPLRWLERRTRGDQLHPLREPSLLAVEPPDHTRYRKTVSAVFTSRAVSALRDLVEQTAINLLDRFAEQPGIVDVVGRYCSQLPIVVISEILGVPEHDRPRVLEFGELAAPSLDIGIPWRQYLRVQQGIRGFDCWLEGHLQQLRHAPGDDLMSQLIQIA-ESGDNETQLDETELRAIAGLVLVAGFETTVNLLGNGIRMLLDTPEHLATLRQHPELWPNTVEEILRLDSPV-QLTARVACRDVEVAGVRIKRGEVVVIYLAAANRDPAVFPDPHRFDIERPNAGRHLAFSTGRHFCLGAALARAEGEVGL-RTFFDRFPDVRAAGAGS--RRDTRVLRGWSTLPVTLGPARSMVSP |
| 3VRM Chain:A ((85-403)) | ------------------------------------------------------------------------------------------------------------PMMILMDPPDHTRLRKLVGRSFAVRRMNELEPRITEIADGLLAGLPTD-GPVDLMREYAFQIPVQVICELLGVPAEDRD---DFSAWSSVLVDDS-PADDKNAAMGKLHGY---LSDLLERKRTEPDDALLSSLLAVSDEDGD---RLSQEELVAMAMLLLIAGHETTVNLIGNGVLALLTHPDQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAANRDADWMPEPDRLDITRDASG-GVFFGHGIHFCLGAQLARLEGRVAIGRLFADRPELALAVGLDELVYRESTLVRGLSRMPVTMGPRSA---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VRM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -176597 for 2418 contacts (-73.0/contact) +
2D Compatibility (PS) -34081 + (NN) -16951 + (LL) 8280
1D Compatibility (HY) -25600 + (ID) 6600
Total energy: -251549.0 ( -104.03 by residue)
QMean score : 0.435
|
|
|