Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPG-YPV-AGQVWEATATVNAIRGSV--TPAVSQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYF-DVTGPSPTIVAMNNGMEDLLIWEP---
2XL4 Chain:A ((26-172))
RPKLS------------------TKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMK-RYQQEILSIDAIKRASEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGK--KDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD
General information:
TITO was launched using:
RESULT:
Template:
2XL4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32776 for 919 contacts (-35.7/contact) +
2D Compatibility (PS) -13553 + (NN) 10224 + (LL) 2700
1D Compatibility (HY) -1200 + (ID) 950
Total energy: -35555.0 ( -38.69 by residue)
QMean score : 0.114
(partial model without unconserved sides chains):
PDB file :
Tito_2XL4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XL4-query.scw
PDB file :
Tito_Scwrl_2XL4.pdb
: