Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMVNTTTRLSDDALAFLSERHLAMLTTLRADN-SPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGARWLSLEGRAAVNSDIDAVRDAELRYAQRYRTP--RPNPRRVVIEVQIERVLGSADLLDRA
2IAB Chain:A ((6-137))
--PARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGE--TFLVATPAASPTGRNLSETGRVRLGIGPTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREA----
General information:
TITO was launched using:
RESULT:
Template:
2IAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36403 for 904 contacts (-40.3/contact) +
2D Compatibility (PS) -14509 + (NN) -7004 + (LL) 792
1D Compatibility (HY) 0 + (ID) 1200
Total energy: -58324.0 ( -64.52 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_2IAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IAB-query.scw
PDB file :
Tito_Scwrl_2IAB.pdb
: