Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDVLRTPDSRFEHLVGYPFAPHYVDVTAGDTQPLRMHYVDEGPGDGPPIVL-LHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLVVANGFL-------PAAQGRTPLPFYVWRAFARYSPVLPAGRLVNFGTVHRVPAGVRA---GYDAPFPDKTYQAGARAFPRLVPTSPDDPAVPANRAAWEALGRWD-----KPFLAIFGYRDPILGQADGPLIKHIPGAAGQPHARIKASHFIQEDSGTELAERMLSWQQAT |
1BEZ Chain:A ((2-304)) | VNAIRTPDQRFSNLDQYPFSPNYLDDLPG-YPGLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPVDEEDYTFEFHRNFLLALIERLDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFTAY-KYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMV-AQRDQACIDIST---EAISFWQNDWNGQTFMAI-GMKDKLLGPDVMYPMKALINGCPEPLEIADAGHFVQE-FGEQVAREALK----- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1BEZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -111650 for 2467 contacts (-45.3/contact) +
2D Compatibility (PS) -29937 + (NN) -13660 + (LL) 1020
1D Compatibility (HY) -22400 + (ID) 5900
Total energy: -182527.0 ( -73.99 by residue)
QMean score : 0.447
|
|
|