Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEVVRRGLQAHVTGRTITEVRVHHPRAVRRHDAGPADLTARLRGARINGTDRRGKYLWLTLNTAGVHRPTDTALVVHLGMSGQMLLGAV--PCAAHVRISALLDDGTVLSFADQRTFGGWLLADLVTVDGSVVPVPVAHLARDPLDPRFDCDAVVKVLRRKHSELKRQLLDQRVVSGIGNIYADEALWRAKVNGAHVAATLRCRRLGAVLHAAADVMREALAKGGTSFDSLYVNVNGESGYFERSLDAYGREGENCRRCGAVIRRERFMNRSSFYCPRCQPRPRK
3GQ5 Chain:A ((1-272))
-PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIR-HPRDSEAFAARMIGQTVRGLERRGKFLKFLLDR--------DALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYAKEEADRRP---PLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM----------------------HLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ-----
General information:
TITO was launched using:
RESULT:
Template:
3GQ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151642 for 1998 contacts (-75.9/contact) +
2D Compatibility (PS) -26629 + (NN) -10437 + (LL) 1104
1D Compatibility (HY) -15200 + (ID) 4450
Total energy: -207254.0 ( -103.73 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3GQ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GQ5-query.scw
PDB file :
Tito_Scwrl_3GQ5.pdb
: