Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDRDRLRPPLDERSLRDQLIGAGSGWRQLD-----VVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQPF----VVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEA--RIIQWRNANPQLAADYRARSLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGRTVVVSAGDVVHLR
4WF2 Chain:A ((65-304))
------------------QLLNAKQILGQLDGGSVAVLPVIDSTNQYLLDRI--GELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQAPAAAIG-LSLVIGIVMAEVLRKLGA---DKVRVKWPNDLYLQDRKLAGILVELT---DAAQIVIGAGINMAM-------GWITLQEAGINL-DRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNF-INRPVKL-IIGDKEIFGISRGIDKQGALLLEQDG--------------
General information:
TITO was launched using:
RESULT:
Template:
4WF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124677 for 1686 contacts (-73.9/contact) +
2D Compatibility (PS) -23284 + (NN) -10450 + (LL) 2580
1D Compatibility (HY) -17600 + (ID) 4100
Total energy: -177531.0 ( -105.30 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_4WF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WF2-query.scw
PDB file :
Tito_Scwrl_4WF2.pdb
: