Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGEE
3D55 Chain:C ((1-86))
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREM-----
General information:
TITO was launched using:
RESULT:
Template:
3D55.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15955 for 438 contacts (-36.4/contact) +
2D Compatibility (PS) -9127 + (NN) -1529 + (LL) 8
1D Compatibility (HY) -10000 + (ID) 4300
Total energy: -40903.0 ( -93.39 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_3D55.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D55-query.scw
PDB file :
Tito_Scwrl_3D55.pdb
: