Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAF------RNCTFERTTLWHSTFAQC----------SMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
2XTY Chain:A ((21-172))
------------------------ENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFM--------FCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFT-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2XTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99802 for 973 contacts (-102.6/contact) +
2D Compatibility (PS) -13006 + (NN) 1910 + (LL) 3356
1D Compatibility (HY) -5600 + (ID) 1850
Total energy: -114992.0 ( -118.18 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2XTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XTY-query.scw
PDB file :
Tito_Scwrl_2XTY.pdb
: