Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRVAGQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANPLERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLDVDLVYRFI------RDTTWVSVRWYRPGGPLTAQQVGQQYLAIVLGGITKEGV
1VI0 Chain:A ((12-170))
-------------QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELR-QKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWV---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80102 for 1067 contacts (-75.1/contact) +
2D Compatibility (PS) -16364 + (NN) -6840 + (LL) 2704
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -112952.0 ( -105.86 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1VI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI0-query.scw
PDB file :
Tito_Scwrl_1VI0.pdb
: