Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVREAGEVVAIVPAAGSGERLAVGVPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQIL----GHRAMIVAGGSNRTDTVNLALTVL------SGTAEPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGS-LDLPAAEYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVRG
4CVH Chain:A ((7-250))
-------VAAVLPAG--------PTPKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQHKRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKE-HGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLAL-KYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIK-
General information:
TITO was launched using:
RESULT:
Template:
4CVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151673 for 1725 contacts (-87.9/contact) +
2D Compatibility (PS) -23620 + (NN) -14627 + (LL) 872
1D Compatibility (HY) -13600 + (ID) 3150
Total energy: -205798.0 ( -119.30 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_4CVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVH-query.scw
PDB file :
Tito_Scwrl_4CVH.pdb
: