Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVARHRAQAAADLASLAAAARLPSGLAAACARATLVARAMRVEHAQCRVVDLDVVVTVEVAVAFAGVATATARAGPAKVPTTPG
2KJF Chain:A ((1-60))
LVAYGIAQGTAEKVVSLINAGLTVGSIISILGG----------------------VTVGLSGVFTAVKAAIAKQGIKKAIQL--
General information:
TITO was launched using:
RESULT:
Template:
2KJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15588 for 384 contacts (-40.6/contact) +
2D Compatibility (PS) -6375 + (NN) -3562 + (LL) 2356
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -25619.0 ( -66.72 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_2KJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KJF-query.scw
PDB file :
Tito_Scwrl_2KJF.pdb
: