Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
4M3E Chain:A ((22-214))
---------------------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
4M3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100765 for 1393 contacts (-72.3/contact) +
2D Compatibility (PS) -21438 + (NN) -17408 + (LL) 1092
1D Compatibility (HY) -24800 + (ID) 9600
Total energy: -172919.0 ( -124.13 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_4M3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M3E-query.scw
PDB file :
Tito_Scwrl_4M3E.pdb
: