Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPRCFWCNDDPLYMAYHDEEWGVPQRDPDALFELLLLEGFQAGLSWITVLKKRERYREVLFGFDVQRVAQMSDAEIDELMLDPGIIRNRAKLNAARQNAQAWLELDDP----AGFLWSFVGGQPKINHFAGRAEVPAITPEAEAMSKALRKAGFNFVGPTICYAFMQASGMVMDHTQDCDRYAQLVG
2OFK Chain:B ((1-179))
MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGCFCHP----
General information:
TITO was launched using:
RESULT:
Template:
2OFK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96307 for 1327 contacts (-72.6/contact) +
2D Compatibility (PS) -19220 + (NN) -13774 + (LL) 260
1D Compatibility (HY) -19200 + (ID) 4750
Total energy: -152991.0 ( -115.29 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_2OFK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OFK-query.scw
PDB file :
Tito_Scwrl_2OFK.pdb
: