Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDNQRQYPRTPLKCRIRISHPLFGELMAQTRDLSDTGVYVKHPDLTQLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA----------------------------------
1YWU Chain:A ((1-125))
MSDQHDERRRFHRIAFDADSEILQG-ERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRMEISLAWARDGLLGFECQHIDLDSISHLRRLVELNLGDEELLERELALLVSAHDD
General information:
TITO was launched using:
RESULT:
Template:
1YWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42058 for 537 contacts (-78.3/contact) +
2D Compatibility (PS) -9156 + (NN) -3866 + (LL) 176
1D Compatibility (HY) -800 + (ID) 500
Total energy: -56204.0 ( -104.66 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1YWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YWU-query.scw
PDB file :
Tito_Scwrl_1YWU.pdb
: