Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTFDLTAALGDRANQPEISRLLVAQLMTSNNEDTRKLRRAQER--------EQTQELNELAHRLAGMASLIHAHAVERACHQLEIACGESSVRK---LADAVDDLVTALGELQCELHDWMTMTAPQGTAKS
3KYJ Chain:A ((9-116))
-------------------MDEIWALYADDGAQALDAMEASLLALQAGEDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIVEILLFASDTLRAMLEETAASRADVEGTGS
General information:
TITO was launched using:
RESULT:
Template:
3KYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26571 for 690 contacts (-38.5/contact) +
2D Compatibility (PS) -10680 + (NN) -8330 + (LL) 1312
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -46219.0 ( -66.98 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_3KYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KYJ-query.scw
PDB file :
Tito_Scwrl_3KYJ.pdb
: