Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAPIFPAA-------PPGSTGSRAVRCRSTERGG-------PDMELLNATPLAAAYNQGLDAEGRESLVVIAKGSFDLP-LDGREARLLDEQQTLLMVDEFYGEPGFSAPRRECEFV---------PFKPFCDVLVLGSAQAPGGRPV-QQLTAGIRVGRVSKALTVHGPRQWEPGLLGAGAGVAQPFQSQDISYASAFGGSHASPDNPGFMDCYMANPAGCGWFPRSADTAEIVGTPMPATEKLGEPVDSPHGRFTPMALGPLGRHWQARV--GFAGRYDDAWLAERFPFLPADFDERYFQSAPADQWTDHLRGGEEVLLLNLTGEERAAFRVPRREVPVTFFLKKGGHETAQARIDTLLVDCDARRVE-------VTWRIRRPLKRNLFEIAQVLVGSKSAAW--------WRARELGKDYYPSLAALARSRQAEEDEA |
| 4FDT Chain:A ((21-425)) | MQTKIQKYAGTAMPYPNRTDGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEK-------GDWLPIYKAFVHKKIS-------------PVPIMKKFLLNPEQ----YLDKEAEEFVMALFSVAAILPD-TSIPLNLEDLFTLDEWHRYWQTQNLRQYMSK-SSAPVGKMLPVAIA-----------WPLLSEFIRSAQEVISGK--SDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRD--RDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 788 for 2742 contacts (0.3/contact) +
2D Compatibility (PS) -37304 + (NN) -5781 + (LL) 1820
1D Compatibility (HY) -16800 + (ID) 3100
Total energy: -60377.0 ( -22.02 by residue)
QMean score : 0.157
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