Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METPAMFIKRCSRSIFLQVVIGLVIGVICGVGIPD------LAVQMKPLGDGFIKLIKMLIALIVFCVVVNGISGAGDLKKVGRIGLKSVIYFEILTTIALVLGLVVAYSLGLGSGANIHLNELPAGDVALYTGRTQEIHGP--VAFLMGLIPTSVFSAFAENDILQVLLFSVLFGSALNL--------VGEQASGVARLINEFSHIVFRIMGMIVRLAPLGVFGAVAFTTARYGVDSLSHLGALVLVFYATCLVFVMAVLGSVLRLSGVRMLPFLRYFREELLIVMGTASSDAVLPQVMRKLEHMGIRSSTVGLVIPTGYSFNLDGFSIYLTLAVVFIAHVTGTPLAMTDLITILLVSLVTSKGAHGIPGSALVILAATLTAVPAIPV------AGLVLVLSVDWFMGIGRALTNLIGNCVATVTIARWENDIDMPRAQAILDGRLEAPAKADGEPLKRSAVAGEGKLHG |
4OYE Chain:A ((8-409)) | -----------------KILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISP-ARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG--IHL--------AVGG-------APPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSV-GLPLTDPNVAAAYAMILGIDAILDMGATMVNVTGDLTGTAIVAKTE---------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OYE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -470788 for 3313 contacts (-142.1/contact) +
2D Compatibility (PS) -38070 + (NN) -14625 + (LL) 4184
1D Compatibility (HY) -38800 + (ID) 5600
Total energy: -563699.0 ( -170.15 by residue)
QMean score : 0.376
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