Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MECATTVHRETVDSG-STHGAAEHASVDRRGLS-WKAGKPSIHGHHGV---------------------------------------
2KPJ Chain:A ((1-94))
MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTVPIESGYTLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KPJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2898 for 244 contacts (-11.9/contact) +
2D Compatibility (PS) -4747 + (NN) -449 + (LL) 0
1D Compatibility (HY) -400 + (ID) 250
Total energy: -8744.0 ( -35.84 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_2KPJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPJ-query.scw
PDB file :
Tito_Scwrl_2KPJ.pdb
: