Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRH-FRVLRYDARGHGASSVPPGPYT---LARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAW-----------LGPAAQWDERIAAVLQAEDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGELIAASIAGARLVTLP-AVHLSNVEFPQAFEGAVLSFLGAA
2OCI Chain:A ((10-253))
----------NGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKW------------VDGIRQF-----KHLPDGNIC-------RHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ--
General information:
TITO was launched using:
RESULT:
Template:
2OCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157515 for 1978 contacts (-79.6/contact) +
2D Compatibility (PS) -23677 + (NN) -5205 + (LL) 2416
1D Compatibility (HY) -13600 + (ID) 3150
Total energy: -200731.0 ( -101.48 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2OCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCI-query.scw
PDB file :
Tito_Scwrl_2OCI.pdb
: