Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRFEIAFSGQLVAGARPEVVKANLAKLFQADAQRIELLFSGRRVVIKNNLDAASAEKYRSVLERAGAIAVVAEMEVEEVVMAPPPAQTTPVEAPQTRAATGTSAPAGRLQVAPRDGYMAAFAEVDAPDFGLAPVGADLQDAKAEAEAPKLDLSRFSVAPVGSDMGQARSEPAAPAPDTSHLRLQD
4YG2 Chain:C ((306-344))
--------TGELICAANMELSLDLLAKLSQSGHKRIETLFT-------NDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVK
General information:
TITO was launched using:
RESULT:
Template:
4YG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10037 for 153 contacts (-65.6/contact) +
2D Compatibility (PS) -4199 + (NN) -2019 + (LL) 1676
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -17829.0 ( -116.53 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_4YG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YG2-query.scw
PDB file :
Tito_Scwrl_4YG2.pdb
: