Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPFATIPATERNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDV-VLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKG-LFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPEKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKA |
| 2O8V Chain:A ((17-244)) | -------------------------RILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQ-EARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ-------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRK-----------------LKRECGLHEG------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O8V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69442 for 1540 contacts (-45.1/contact) +
2D Compatibility (PS) -21999 + (NN) -7445 + (LL) 3240
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -113346.0 ( -73.60 by residue)
QMean score : 0.422
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