Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLAGSFAALFLSLSAQAADCTFTQLEIVPQFGSPNMFGGEDEHVRVMFSNEDPNDDNPDAFPEPPVYLADRDSGNDCRIEDGGIWSRGGVFLSQDGRRVLMHEFSGSSAELVSYDSATCKVV----HREDISGQRWAVDKDGLRLGQKCSGESVDSCAKIVKRSLAPFCQTAKK
2HQS Chain:A ((185-240))
--------------------------------------------------------------------------------------------AWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSN
General information:
TITO was launched using:
RESULT:
Template:
2HQS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10080 for 283 contacts (-35.6/contact) +
2D Compatibility (PS) -5579 + (NN) -2776 + (LL) 3576
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -16559.0 ( -58.51 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_2HQS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HQS-query.scw
PDB file :
Tito_Scwrl_2HQS.pdb
: