Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHPTPRLAAALLAGSGLGWPLLAQADLVEDSHASLELRNFYFNRDFRQSGARDNADEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSGSGSGGTGLLPADGSAGGSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSA-NRIGGRSDAFDFAGGDYRLTPALT-ASLHQGRLKDIYRQTFAGLVHTLDLGGQRSLKSDLRFARASEDGGFR--ELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAG-SDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVA-RGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFAND--LDENRLILSYSLALW |
| 4FMS Chain:B ((9-396)) | --------------------------FLEDAKASLTARNFHLHRNFVG----GKAEEWTQSFILDARSGFTQGSVGFGLDVLGLYSLKLD--------------------ADDFGRLAVAGKLRVSNSELKIGEWMPVLPILRSDDGRSLPQTFRGGQLSANEIAGLTLYAGQFRGNSPRNDASMQDMSLFGRPAATSDRFDFAGGEYRFNGERSLLGLWNAELKDIYRQQYLQLQHSQPL-GDWLLGANLGGFRGRDAGSARAGKLDNRTVSALFSARYGLHTLYLGLQKVSGDDGWMRVNGTSGGTLANDSYNASYDNPGERSWQLRYDFDFVGLGLPGLTFMTRYLHGDHVRLAGVTDDGSEWGRESELGYTLQSGAFKRLNVRWRNSSQRRDWGSNTRFDENRLIVSYPLSLL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FMS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19896 for 2775 contacts (-7.2/contact) +
2D Compatibility (PS) -36105 + (NN) 3228 + (LL) 392
1D Compatibility (HY) -25600 + (ID) 8100
Total energy: -86081.0 ( -31.02 by residue)
QMean score : 0.180
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