Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDP---QLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGDLHRRWVDLKSLVTG-KDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDARA
3AK8 Chain:A ((22-166))
-SESDKKATVELLNRQVIQFIDLSLITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINS----KTPLKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLWFIESNIE---
General information:
TITO was launched using:
RESULT:
Template:
3AK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6798 for 1104 contacts (-6.2/contact) +
2D Compatibility (PS) -15456 + (NN) -7608 + (LL) 796
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -32716.0 ( -29.63 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_3AK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AK8-query.scw
PDB file :
Tito_Scwrl_3AK8.pdb
: