Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGG-------AGLNGMAQWFESIGLTPGYLLATLAGSAEFFGGLALVIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLDGKLSR
3HCY Chain:A ((-2-145))
AIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAARGLSEHYQRAVDGHSPWINEPEPIFVENVDDAEFSRELKESIVGE---GIAALGFFPLVTEGRLIG---KFMTYYDR-------PHRFADSEIGMALTIARQLGFSIQRMRAEYARRQ
General information:
TITO was launched using:
RESULT:
Template:
3HCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72758 for 905 contacts (-80.4/contact) +
2D Compatibility (PS) -14111 + (NN) -3424 + (LL) 732
1D Compatibility (HY) 4800 + (ID) 350
Total energy: -85111.0 ( -94.05 by residue)
QMean score : 0.015
(partial model without unconserved sides chains):
PDB file :
Tito_3HCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HCY-query.scw
PDB file :
Tito_Scwrl_3HCY.pdb
: