Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVYAIIGGTGLTQLEGLTLSESLPIETPYGAPSAPLQRGRYAGREVLFLARHGHPHRFPPHQVNYRANLWALKQAGAEAVIAVNAVGGIHAAMGTGHLCVPHQLIDYTSGREHTYFAG---DIEHVTHIDFSHPYDEPLRQRLIEALRALGL-------AHSSHGVYACT---------QGPRLETVAEIARLERDGNDIVGMTGMPEAALARELDLPYACLALVVNPAAGKSAGI-ITMAEIEQALHDGIGKVREVLARVLAG
4L5C Chain:A ((29-287))
-----IIGGSGFDDPNLFKKVGVRQVTTPFGKPSDTLVEGFVGDVACVVLPRHGKGHLIPPSEVNYRANVWALKDLGCTHILATNACGSLQEDLVPGDFVVLNQFMDKTWGRENTFYGSKPDSLKGVLHMPMAEPFCERTRQILIQAARNKSINVYDKKTMDKSACIHPCVHAEGSAVTINGPRFSTRCESFIHKAMGLDIVNMTLVPEVSLAREAGLSYASIAIVTDFDCWKSEEEHVCVDMVLEQFRKSVVHVREILLEAVA-
General information:
TITO was launched using:
RESULT:
Template:
4L5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155634 for 1901 contacts (-81.9/contact) +
2D Compatibility (PS) -26501 + (NN) -13243 + (LL) 436
1D Compatibility (HY) -17200 + (ID) 4200
Total energy: -216342.0 ( -113.80 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4L5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4L5C-query.scw
PDB file :
Tito_Scwrl_4L5C.pdb
: