Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNGAVPMLAIDGPSGAGKGTVAGLLARRLGWNLLDSGALYRLLAFAAVNHGVDLTNEEALKVLAAHLDVQFVAADGSHGQRIILEGEEVTDVIRTEQVGAGASQVAALPAVRDALLQRQRAFREAPGLVADGRDMGTVVFPDAPLKIFLTASAEERARRRYLQLKAKGADVDQSALLEEIRERDERDSQRAVAPLKPADDAILLDSTEMSIEAVVETIIRHCERQGWDV
3AKE Chain:A ((4-208))
------IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQ--AEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEV--PPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQAYEEV-----LRDLLRRDERD--QSA----PAPDALVLDTGGMTLDEVVAWVLAHIRR-----
General information:
TITO was launched using:
RESULT:
Template:
3AKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134339 for 1678 contacts (-80.1/contact) +
2D Compatibility (PS) -22163 + (NN) -13628 + (LL) 1000
1D Compatibility (HY) -15600 + (ID) 4350
Total energy: -189080.0 ( -112.68 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_3AKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKE-query.scw
PDB file :
Tito_Scwrl_3AKE.pdb
: