Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQTDKHYFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLENR
3CJN Chain:A ((37-157))
-------------------YNANLRKEMTALGLSTAKMRALAILSAKDGLPIG-TLGIFAVVEQSTLSRALDGLQADGLVRREVD--DQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLATLNKMLANI---
General information:
TITO was launched using:
RESULT:
Template:
3CJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82027 for 792 contacts (-103.6/contact) +
2D Compatibility (PS) -13238 + (NN) -8392 + (LL) 2016
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -109891.0 ( -138.75 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_3CJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CJN-query.scw
PDB file :
Tito_Scwrl_3CJN.pdb
: