Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEEAGFGPGRSNMHTGETLAAAPPARPLRQSRLGGLSLFLALAGVAIALAVMALALGERIDLSDENHLLGLFAALLAVFAVSTCGLVL-------GLAGLLRRSRKRHLALAGIVLNLSCLLWGWHALSTAAAAILMVLGQTGLSFLSALAVLFGMIFFRQA--------------
4JQF Chain:A ((1-179))
-AEALSNPGALDLPSLTSLLSEKAKEFLMENRVQSFY----QQELEMVESLLSLANQPVIHSTTSKAIHSIFKNAIQLLQEK--GLVFQKDDGFDNLYYVTREDKDLHRKIHRIIQQ-DCQKPNHMEKGCHFLHILACARLSIRPGLSEAVLQQVLELLEDQSDIVSTMEHYYTAF
General information:
TITO was launched using:
RESULT:
Template:
4JQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128324 for 1038 contacts (-123.6/contact) +
2D Compatibility (PS) -16281 + (NN) -11130 + (LL) 1120
1D Compatibility (HY) -4000 + (ID) 1150
Total energy: -159765.0 ( -153.92 by residue)
QMean score : 0.251
(partial model without unconserved sides chains):
PDB file :
Tito_4JQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JQF-query.scw
PDB file :
Tito_Scwrl_4JQF.pdb
: