Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPENMQEFIELNSELAEVWPNITEKKDALPDAEEWDGVAGKLQHLER
2FD2 Chain:A ((1-106))
-AFVVTDNCIKCKYTDCVEVCPVDAFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER
General information:
TITO was launched using:
RESULT:
Template:
2FD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77101 for 822 contacts (-93.8/contact) +
2D Compatibility (PS) -11400 + (NN) -9015 + (LL) 208
1D Compatibility (HY) -15600 + (ID) 4900
Total energy: -117808.0 ( -143.32 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_2FD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FD2-query.scw
PDB file :
Tito_Scwrl_2FD2.pdb
: