Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
4H2J Chain:A ((19-240))
-----------RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-----------LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE------------------
General information:
TITO was launched using:
RESULT:
Template:
4H2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139264 for 1633 contacts (-85.3/contact) +
2D Compatibility (PS) -23751 + (NN) -18285 + (LL) 2600
1D Compatibility (HY) -21600 + (ID) 5900
Total energy: -206200.0 ( -126.27 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_4H2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H2J-query.scw
PDB file :
Tito_Scwrl_4H2J.pdb
: