Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTPRPSLTLTLLQAREAAMSFFRPSLNQHGLTEQQWRVI-RILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEKNYQRIQERFGEEKLAQLLELLNELKKIKP
4AIJ Chain:A ((29-135))
-------------------------------LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGVISSTRKEILGGISSDEIAVLSGLIDKLEK---
General information:
TITO was launched using:
RESULT:
Template:
4AIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47758 for 621 contacts (-76.9/contact) +
2D Compatibility (PS) -11722 + (NN) -7694 + (LL) 2180
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -71644.0 ( -115.37 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_4AIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AIJ-query.scw
PDB file :
Tito_Scwrl_4AIJ.pdb
: