Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | METVLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALTLIEEPTSGSLKIAGQEVKGASKDQRRQLRRDVQMVFQ--NPYASLNPRQKIGDQLAEPLLINTALSREERREKVQQMMRQVGLRPEHYQRYPHMFSGGQRQRIALARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDVLVMYLGRPAEMGPADKLYENPLHPYTRALLSATPAIHPDPTKPKIRIQGELPNPLNPPEGCAFHKRCPYATERCRSEVPELRLLDQRQVACHHAEQFLG |
| 4YMV Chain:J ((7-237)) | -------------------VYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNG-KVNINKVRQKVGMVFQHFNLFPHLTAIENI--TLA-PVKVK-KMNKKEAEELAVDLLAKVGLLDKKDQ-YPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVV-VTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLS-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YMV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94721 for 1848 contacts (-51.3/contact) +
2D Compatibility (PS) -24935 + (NN) -10632 + (LL) 5192
1D Compatibility (HY) -19200 + (ID) 4150
Total energy: -148446.0 ( -80.33 by residue)
QMean score : 0.496
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