Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKNKTFLAAALVALAASFPVHAATDYTRTRYPIVLSHGLFGFKSVGPVDYWHAIVPALEKDGAKVFATSQSPVNSNEVRGEQLLAQVEEVLALTGAEKVNLIGHSQGGMTVRYVAGVAPQLVASVTTMGTPHKGTPVADAVTGFSEFLGPIGTEVIASAVEALFSVVDIVDGGEWVKGDALAALNSLNTPGTARFNQRFPQAIPASACGQGAETVAGVRYYSMSG------TGSLTNALDPSSAGLAVTGLLFGEA-NDGLVGQCSSHLGSVVKDNYRMDHLDEVNQLLGLVSLFESDPTQVYRQHANRLRNVGL |
4GXN Chain:A ((23-302)) | -----------------------------TKYPIVLVHGLAGFNEIVGFPYFYGIADALRQDGHQVFTASLSAFNSNEVRGKQLWQFVQTLLQETQAKKVNFIGHSQGPLACRYVAANYPDSVASVTSINGVNHGSEIADLYRRIMR-KDSIPEYIVEKVLNAFGTIISTFSGHRG--QDAIAALESLTTEQVTEFNNKYPQALPKTPGGEGDEIVNGVHYYCFGSYIQGLIAGEKGNLLDPTHAAMRVLNTFFTEKQNDGLVGRSSMRLGKLIKDDYAQDHIDMVNQVAGLVG-YNEDIVAIYTQHAKYL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GXN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91844 for 2380 contacts (-38.6/contact) +
2D Compatibility (PS) -28533 + (NN) -5998 + (LL) 3432
1D Compatibility (HY) -23200 + (ID) 5850
Total energy: -151993.0 ( -63.86 by residue)
QMean score : 0.430
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