Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIPAIDLKDGACVRLRQGLMEDATVFSDDPVAMAAKWVDGGCRRLHLVDLNGAFEGKPVNGEVVTAIARRYPDLPIQIGGGIRSLETIEHYVRAGVSYVIIGTKAVKQPEFVGEACRAFPGKVIVGLDAK--DG--FVATDGWAEVSEVQVIDLARRFEADGVSAIVYTDISKDGMMQGCNVEATAALANATRIPVIASGGIHNLGDIQKLLDARTPGIIGAITGRAIYEGTLDVAEAQALCDNFKA
2Y89 Chain:A ((3-240))
LILLPAVNVVEGRAVRLVQGKAGSQTEYGS-AVDAALGWQRDGAEWIHLVDLDAAF-GRGSNHELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGR-----DGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA-------
General information:
TITO was launched using:
RESULT:
Template:
2Y89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -203768 for 1948 contacts (-104.6/contact) +
2D Compatibility (PS) -25126 + (NN) -10922 + (LL) 728
1D Compatibility (HY) -16000 + (ID) 3650
Total energy: -258738.0 ( -132.82 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2Y89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y89-query.scw
PDB file :
Tito_Scwrl_2Y89.pdb
: