Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYDQINSYLVDIFNRIMIIEEMSLKTSQFSDVSLKEMHTIEIIGKHSEVTPSDVARELMLTLGTVTTSLNKLEKKGYIERKRSSIDRRVVHLSLTKRGRLLDRLHSKFHKSMVSHIIEDLGEEDIKMLTSALGNLHKFLEDLV
3BPV Chain:A ((7-141))
-----LKGLLSIILRSHRVFIGRELGH---LNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEAVRM-
General information:
TITO was launched using:
RESULT:
Template:
3BPV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43232 for 851 contacts (-50.8/contact) +
2D Compatibility (PS) -14071 + (NN) -5280 + (LL) 864
1D Compatibility (HY) -8400 + (ID) 1300
Total energy: -71419.0 ( -83.92 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_3BPV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BPV-query.scw
PDB file :
Tito_Scwrl_3BPV.pdb
: