Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSFDERKILRTNFSNQPMISGGQSCSSDTCNKKSDLYKDTRSDCDSNNSSAQVNNSTQILLDDLPPQKIVKELDRFIIGQDDAKRAVAIALRNRWRRNKVP-LPLRDEIIPKNILMIGHTGVGKTEIARRLAKLAGAPFIKV-EATKFTEIGYVGRDVDSITRDLVDAAIVLVKEKARKALAKKALNLAEKIIVNSMVGENATEESKKTYRERLRNKEFEDGEVSINVRESKSMLPTFDIPGMPGRQVGVVNVTELMGKMFNGGKKTKTITVKVKEAREILINEESERLMDEDKIIKEAIDLVSNEGIVFLDEIDKIAARTEVKG---EVNREGVQRDLLPLLEGTTVSTKYGYVKTD-YILFIASGAFHLSKPSDLLP--ELQGRLPIRVELKALT-QEDLIKILKEPESSLLKQYIALMKTENVTLEFTDD-GIETIAEIAFTVNREVENIGARRLHTIMEKLLDEISFIASEK-NGEKFVIDSKYVKDKLESISKQLDLSRFIL |
| 1G41 Chain:A ((2-444)) | -------------------------------------------------------------SEMTPREIVSELDQHIIGQADAKRAVAIALR-NRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKFTV----GKEVDSIIRDLTDSAMKLVRQQEIAKNR--------------------------------------------------------------------------------------------------LIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKG--EYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDH-ILFIASGAFQVARPSDLIPELQG--RLPIRVELTAL-SAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA-VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMN-GQTVNIDAAYVADALGEVVENEDLSRFIL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1G41.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182691 for 2530 contacts (-72.2/contact) +
2D Compatibility (PS) -34887 + (NN) -13143 + (LL) 8980
1D Compatibility (HY) -28800 + (ID) 9650
Total energy: -260191.0 ( -102.84 by residue)
QMean score : 0.646
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