Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LEKYLICSDLDGTLLLKNQTISPKTLNLLQQLIEEGHHFAVSTGRMYNSATDFAKLVHP---KADVIASNGGVVAVS--GEIIQQEKMKQSALLETFLLCQNHDLPVFFFSTDTVFYTKNPPYYFT-DEEDKGRVNATKLV-AIKSREIFLEHADQFINGIVIEEED--FDKLAVLRSDLEKLSDVSILSSHANNIEILPKDMDKKYAVKNLAAHLNIKPENVITFGDGENDIGMLEVAGAGVAMENASELVKKSADFVTTANDADGIYYFLKKHLNR |
| 1RKQ Chain:A ((3-271)) | LAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTLYTANRDISYYTVHESFVATI--PLVFCEAEK---M-DPNTQFLKVMMIDEPAILDQAIARIPQEVKEKYTV--LKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RKQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -105060 for 2298 contacts (-45.7/contact) +
2D Compatibility (PS) -28086 + (NN) -13003 + (LL) 924
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -164825.0 ( -71.73 by residue)
QMean score : 0.453
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