Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLGVIAAAIAVGLG-----ALGAGIGNGLIVSKTVEGVARQPEARSMLQSIMFVGVALVEALPIIAVVIAFMVLNK
4BEM Chain:B ((6-76))
--LDFIKACSAIGAGIAMIAGVGPGIGQGFAAGKGAEAVGRQPEAQSDIIRTMLLGAAVAETTGIYGLIVALILL--
General information:
TITO was launched using:
RESULT:
Template:
4BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27109 for 353 contacts (-76.8/contact) +
2D Compatibility (PS) -6597 + (NN) -1398 + (LL) 548
1D Compatibility (HY) 1600 + (ID) 500
Total energy: -33456.0 ( -94.78 by residue)
QMean score : 0.029
(partial model without unconserved sides chains):
PDB file :
Tito_4BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BEM-query.scw
PDB file :
Tito_Scwrl_4BEM.pdb
: