Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTALNVLIYPDDHLKVVCEPVTKVNDAIRKIVDDMFDTMYQEKGIGLAAPQVDILQRIITIDVEGDKQNQFVLINPEILASEGETGIEEGCLSIPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVDYLSPLKRQRIKEKLIKYKKQIAKS
1XEN Chain:A ((1-165))
-SVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLK---
General information:
TITO was launched using:
RESULT:
Template:
1XEN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98971 for 1289 contacts (-76.8/contact) +
2D Compatibility (PS) -17567 + (NN) -4610 + (LL) 388
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -145360.0 ( -112.77 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1XEN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEN-query.scw
PDB file :
Tito_Scwrl_1XEN.pdb
: