Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNSSSTSTSSTTGGSLLLLCEEEESWAGRRIPVSLLYSGLAIGGTLANGMVIYLVSSFRKLQTTSNAFIVNGCAADLSVCALWMPQEAVLGLLPTGSAEPPADWDGAGGSYRL-LRGGLLGLGLTVSLLSHCLVALNRYLLITRAPATYQALYQRRHTAGMLALSWALALGLVLLLPPWAPRPGAAPPRVHYPALLAAAALLAQTALLLHCYL--GIVRRV--RVSVKRVSVLNFHLLHQLPGCAAAAAAFPGAQHAPGPGGAAHPAQAQPLPPALHPRRAQRRLSGLSVLLLCCVFLLATQPLVWVSLASGFSLPV--PWGVQAASWLLCCALSALNPLLYTWRNEEFRRSVRSVLPGVGDAAAAAVAATAVPAVSQAQLGTRAAGQHW |
| 2YCW Chain:A ((14-297)) | ---------------------------------MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT--------W--LWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAIT-SPFRYQSLMTRARAKVIICTVWAIS-ALVSFLPIMMHWWRDEDPQA------------------LKCYQDPGCCDFVTNRAYAIASSIISFY----IPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMREHKALKTLG-----IIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNW-LGYANSAMNPIIYC-RSPDFRKAFKRLLAF------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175302 for 2088 contacts (-84.0/contact) +
2D Compatibility (PS) -27911 + (NN) -10264 + (LL) 6840
1D Compatibility (HY) -24400 + (ID) 4150
Total energy: -235187.0 ( -112.64 by residue)
QMean score : 0.266
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