Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNRTSVTDFILLGLTDNPQLQVVIFSFLFLTYVLSVTGNLTIISLTLLDSHLKTPMYFFLRNFSLE------ISFTSVCNPRFLISILTGDKSISYNACAAQLFFFIFLGSTEFFLLASMSYDCYVAICKPLHYTTIMSDRICYQLIISSWLAGFLVIFPPL-------AMGLQLDFCDSNVIDHFTCDSAPLLQISCTDTSTLELMSFILALFTL--ISTLILVILSYTYIIRTILRIPSAQQR----KKAFSTCSSHVIVVSISY--------GSCIFMYVKTSAKEGVALTKGVAILNTSVAPMLNPFIYTLRNQQVKQAFKDVLRKISHKKKKH |
| 3C9L Chain:A ((42-315)) | --------------------------AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT-----LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF-TWVMALACAAPPLVGWSRYIPEGMQ---CSCG-IDYYTPHEE-------TNNE-----SFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSA-VYNPVIYIMMNKQFRNCMVTTLCCGKNDDE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C9L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178444 for 1846 contacts (-96.7/contact) +
2D Compatibility (PS) -24834 + (NN) -5890 + (LL) 3948
1D Compatibility (HY) -23600 + (ID) 3050
Total energy: -231870.0 ( -125.61 by residue)
QMean score : 0.259
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