Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDEANHSVVSEFVFLGLSDSRKIQLLLFLFFSVFYVSSLMGNLLIVLTVTSDPRLQSPMYFLLANLSIINLVFCSSTAPKMIYDLFRKHKTISFGGCVVQIFFIHAVGGTEMVLLIAMAFDRYVAICKPLHYLTIMNPQRCILFLVISWIIGIIHSVIQLAFV-VDLLFCGPNELDSFFCDLPRFIKLACIETYTLGFMVTANSGFISLASFLILIISYIFIL------------VTVQKKSSGGIFKAFSMLSAHVIVVVLVF------GPLIFFYIFPFPTSHLDK-FLAI--FDAVITPVLNPVIYTFRNKEMMVAMRRRCSQFVNYSKIF |
2G87 Chain:A ((58-313)) | -----------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2G87.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -219875 for 1743 contacts (-126.1/contact) +
2D Compatibility (PS) -23636 + (NN) -2079 + (LL) 5476
1D Compatibility (HY) 1600 + (ID) 950
Total energy: -239464.0 ( -137.39 by residue)
QMean score : 0.143
|
|
|