Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEAMKLLNQSQVSEFILLGLTSSQDVEFLLFALFSVIYVVTVLGNLLIIVTVFNTPNLNTPMYFLLGNLSFVD--MTLASFATPKVILNLLKKQKVISFAGCFTQIFLLHLLGGVEMVLLVSMAFDRYVAICKPLHYMTIMNKKVCVLLVVTSWLLGLLHSGFQIPFAVNLPFCGPNVVDSIFCDLPLVTKLAC-IDIYFVQVVIVANSGIISLSC--FIILLI----SYSLILITIKNHSPTGQS-----KARSTLTAHITVVILFFGPC------IFIYIWPFGNHSVDKFLAVFYTI------ITPILNPIIYTLRNKEMKISMKKLWRAFVNSREDT |
2HPY Chain:A ((58-318)) | --------------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT--TLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMAL---------ACAAP---PLVGWSRY--IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF---THQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HPY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224564 for 1717 contacts (-130.8/contact) +
2D Compatibility (PS) -23258 + (NN) -2554 + (LL) 5084
1D Compatibility (HY) -400 + (ID) 750
Total energy: -246442.0 ( -143.53 by residue)
QMean score : 0.143
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