Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAEMNLTLVTEFLLIAFTEYPEWALPLFLLFLFMYLITVLG---NLEMIILILMDHQLHAPMYFLLSHLAFMDVCYSSITVPQMLAVLLEHGAALSYTRCAAQFFLFTFFGSIDCYLLALMAYDRYLAVCQPLLYVTILTQQARLSLVAGAYVAGLISALVRTVSAFTLSFCGTSEIDFIFCDLPPLLKLTCG--------ESYTQEVLIIMFAI-FVIPASMVVILVSYLFIIVAIMGIPAGSQ-AKTFSTCTSHLTAVSL------------FFGTLIFMYLRGNSDQSSEKNRVVSVLYTEVIPMLNPLIYSLRNKEVKEALRKILNRAKLS |
4PXF Chain:A ((39-325)) | ----------------------------MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMG-VAFTWVMALACAAPPLV--------GWSRY------IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIP--LIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD-FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PXF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235375 for 1933 contacts (-121.8/contact) +
2D Compatibility (PS) -27242 + (NN) -11217 + (LL) 4752
1D Compatibility (HY) -24000 + (ID) 3200
Total energy: -296282.0 ( -153.28 by residue)
QMean score : 0.289
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